Coming at this problem from the perspective of someone who is currently level 3...
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FFA is asking for trouble. Back in the day, it was an invitation for one guild to completely dominate every raid spawn on the server. On Veeshan, it became an institutionalized rule that FoH got first pick at everything, because quite simply, they could take it if they wanted it.
Maybe people don't like the idea of waiting in a line with 6+ guilds, but that's what alliances are for. You top tier guilds need to start cooperating with each other if you want to stop the ass-hattery and drama.