As long as you install in separate folders you'll would be fine. I did that and just had to recreate my shortcut for P99. If you patched/installed in the same folder you will have to redo P99 install since your files have been updated/overwritten.
If you just need to recreate your icon, you can go into your P99 installed folder, right click>send to>desktop and add 'patchme' to the end of the Target line.
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[60 Grandmaster] Seito (Human)
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