What do you mean patch over? You shouldn't need to re-install a UI after a patch. r.
The default UI and DuxaUI should be two separate folders inside of the UIfiles folder of your P99 directory, DuxaUI shouldn't be mixed with default if that's what you meant by patch over. Several things in DuxaUI use the files in the default folder to fill in things he didn't change, so DuxaUI is not entirely independent.
Try deleting DuxaUI entirely from your UIfiles folder, unzip the stand alone DuxaUI into a different non-P99 folder, then copy and pasting the Duxaui folder into the UIfiles folder and see if that works.
Or try running DuxaUI's All in One installer instead of the standalone and then re-run the newest P99 patch after that. If that still doesn't work you can find several other UI's in this forum, DuxaUI is based on VertUI which you should still be able to find and download here.
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