On Mac OS, inexplicably, the default drag and drop behavior is overwrite, not merge, as one would expect. Any EQ titanium files that previously existed, such as the UI Files, which do not come in the .zip, have been deleted.
You have to hold the option key when you drag your folder, and then it will give you the option to merge. This is as of 10.7 Lion, I haven't tried it in a while.
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