This is so freaking easy, whatever you have your desktop set as, that's what you set in the game options for windowed mode, then you switch to windowed mode and drag the window up to remove the blue bar. Eq will remember this setting and you will always start like that, you will have to rearrange your UI because windowed mode uses a different setting than full screen. It's nice to just drag my mouse down and do stuff on my comp, then just tab back to EQ.
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