Project 1999 - Have to redo Duxa's installer every time I play

So, whenever I try to play EQ now I must run the duxa all in one installer and then replace the files in the EQ folder with the ones on the p99 site that are updated regularly. I do this and the equ emu window will pop up, it will update itself and then it will patch some eqghost file. Then it will allow me to play EQ. I play for however long i want, logging in an out of the game. However, once I close the equ emu box, it will not open again. I've tried restarting and everything but that doesn't solve it either. I even try to get into EQ through some of the other possible ways that the Duxa installer provides but then I have issues right after the server selection screen. The only solution for me is to re-run the duxa program and re-replace the files and patch the equ emu thing all over again. Then, when I close out the eq emu program I have the same problem with it not loading every time. I run Windows 7 and I had the duxa installer set up a windowed mode for me. It seems like I cant run the full screen mode on this computer no matter which way I try to play so that is why I have to do the windowed mode. Has anyone had this problem before? Am i doing something wrong in installing the duxa program? Help please!